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how are gene counts in groups that are all 0 handled #73

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amjass12 opened this issue Mar 23, 2023 · 0 comments
Open

how are gene counts in groups that are all 0 handled #73

amjass12 opened this issue Mar 23, 2023 · 0 comments
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@amjass12
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amjass12 commented Mar 23, 2023 •
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Hi,

I am running infercnv on control normal cells versus tumour cells.

I was just wondering how genes that have all 0 in a cancer cells but counts in normal cells are handled? I cannot quite find how this behaviour is handled? Would this 'falsely' show as loss and if so, would this be incorrect/ a bug?

Many thanks!

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@amjass12 amjass12 added the bug Something isn't working label Mar 23, 2023
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