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fix enhance_sanity_check for PythonPackage #3477

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When trying to add, not replace paths/commands for the sanity check of Python packages the default lib/python/%(pyshortver)s/site-packages gets replaced.
This leads to duplicating this in many easyconfigs. Use the custom_paths argument for that but still honor if that is given from a child class.

When trying to add, not replace paths/commands for the sanity check of
Python packages the default `lib/python/%(pyshortver)s/site-packages`
gets replaced.
This leads to duplicating this in many easyconfigs.
Use the `custom_paths` argument for that but still honor if that is
given from a child class.
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