h5ad to BAM matching

[davek44]

Hi, perhaps related to this issue in human czbiohub-sf/tabula-sapiens#42, I have also found apparently mismatched BAMs in the mouse data.

For example, cell row 96552 in the tabula-muris-senis-facs-official-raw-obj.h5ad has 'cell' column 'L22.MAA000593.3_8_M.1.1'. The table reports 2099 n_genes and 189281 n_counts.

That appears to match s3://czb-tabula-muris-senis/Plate_seq/3_month/170907_A00111_0051_BH2HWLDMXX/results_gencode_ercc/L22-MAA000593-3_8_M-1-1.gencode.vM19.ERCC.Aligned.out.sorted.bam. However, this BAM only has 486 aligned read rows, so it can't reach those reported gene expression values.

Could you help me understand where I'm going wrong here? Thanks!