Bump to latest iohub

setup.cfg

@@ -29,7 +29,8 @@ install_requires =
     numpy
     magicgui
     qtpy
-    iohub
+    iohub==0.2.0a1
+    pydantic_extra_types>=2.9.0
 
 python_requires = >=3.10
 include_package_data = True

src/napari_iohub/_edit_labels.py

@@ -9,7 +9,7 @@
 
 from napari import Viewer
 import numpy as np
-from iohub.ngff import Plate, Position, Row, Well, open_ome_zarr
+from iohub.ngff.nodes import Plate, Position, Row, Well, open_ome_zarr
 from qtpy.QtWidgets import (
     QFileDialog,
     QFormLayout,

src/napari_iohub/_reader.py

@@ -6,7 +6,7 @@
 
 import dask.array as da
 import numpy as np
-from iohub.ngff import (
+from iohub.ngff.nodes import (
     MultiScaleMeta,
     NGFFNode,
     OMEROMeta,
@@ -16,7 +16,7 @@
     _open_store,
     open_ome_zarr,
 )
-from pydantic.color import Color
+from pydantic_extra_types.color import Color
 
 if TYPE_CHECKING:
     from _typeshed import StrOrBytesPath

src/napari_iohub/_tests/conftest.py

@@ -1,6 +1,6 @@
 import numpy as np
 import pytest
-from iohub.ngff import open_ome_zarr
+from iohub import open_ome_zarr
 
 
 @pytest.fixture(scope="session")

src/napari_iohub/_tests/test_reader.py

@@ -1,6 +1,6 @@
 import os
 
-from iohub.ngff import open_ome_zarr
+from iohub import open_ome_zarr
 from numpy.testing import assert_equal
 
 from napari_iohub import napari_get_reader

src/napari_iohub/_widget.py

@@ -3,7 +3,7 @@
 from typing import Callable
 
 import napari
-from iohub.ngff import Plate, Row, Well, open_ome_zarr
+from iohub.ngff.nodes import Plate, Row, Well, open_ome_zarr
 from napari.qt.threading import create_worker
 from napari.utils.notifications import show_info
 from qtpy.QtCore import Qt