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Visualize tracked cells and their features #13

Merged
merged 33 commits into from
Oct 18, 2024
Merged

Visualize tracked cells and their features #13

merged 33 commits into from
Oct 18, 2024

Commits on Jul 19, 2024

  1. remove unused import

    @ziw-liu
    ziw-liu committed Jul 19, 2024
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  2. configurable logging levels

    @ziw-liu
    ziw-liu committed Jul 19, 2024
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Commits on Jul 22, 2024

  1. metadata options in reader functions

    @ziw-liu
    ziw-liu committed Jul 22, 2024
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  2. add tracking labels viewer

    @ziw-liu
    ziw-liu committed Jul 22, 2024
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  3. fix ambiguous variable name

    @ziw-liu
    ziw-liu committed Jul 22, 2024
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  4. only use labels layer for annotation

    @ziw-liu
    ziw-liu committed Jul 22, 2024
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  5. clean up arguments

    @ziw-liu
    ziw-liu committed Jul 22, 2024
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  6. todo comment

    @ziw-liu
    ziw-liu committed Jul 22, 2024
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  7. improve log message

    @ziw-liu
    ziw-liu committed Jul 22, 2024
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  8. format

    @ziw-liu
    ziw-liu committed Jul 22, 2024
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  9. fix exports

    @ziw-liu
    ziw-liu committed Jul 22, 2024
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Commits on Jul 23, 2024

  1. use unprojected embeddings

    @ziw-liu
    ziw-liu committed Jul 23, 2024
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  2. configurable feature files

    @ziw-liu
    ziw-liu committed Jul 23, 2024
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  3. test add widget

    @ziw-liu
    ziw-liu committed Jul 23, 2024
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  4. use default napari dependencies for dev

    @ziw-liu
    ziw-liu committed Jul 23, 2024
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Commits on Jul 24, 2024

  1. add optional dependencies 

    also redo packaging with pyproject.toml
    @ziw-liu
    ziw-liu committed Jul 24, 2024
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Commits on Sep 2, 2024

  1. relax napari pin after napari-clusters-plotter update

    @ziw-liu
    ziw-liu committed Sep 2, 2024
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  2. format

    @ziw-liu
    ziw-liu committed Sep 2, 2024
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Commits on Sep 3, 2024

  1. wip: use xarray output zarr format for embeddings

    @ziw-liu
    ziw-liu committed Sep 3, 2024
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  2. construct index from xarray

    @ziw-liu
    ziw-liu committed Sep 3, 2024
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Commits on Sep 4, 2024

  1. fix index naming

    @ziw-liu
    ziw-liu committed Sep 4, 2024
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Commits on Sep 13, 2024

  1. bump iohub to 0.2.0a1

    @ziw-liu
    ziw-liu committed Sep 13, 2024
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  2. add fake z axis for tracking

    @ziw-liu
    ziw-liu committed Sep 13, 2024
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  3. ci: use x86_64 runner for macos since higra is not available on arm64

    @ziw-liu
    ziw-liu committed Sep 13, 2024
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  4. disable coverage

    @ziw-liu
    ziw-liu committed Sep 13, 2024
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Commits on Oct 17, 2024

  1. use precomputed umap

    @ziw-liu
    ziw-liu committed Oct 17, 2024
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  2. aggregate feature loading

    @ziw-liu
    ziw-liu committed Oct 17, 2024
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  3. Merge branch 'main' into view-tracks

    @ziw-liu
    ziw-liu committed Oct 17, 2024
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  4. update widget name in test

    @ziw-liu
    ziw-liu committed Oct 17, 2024
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  5. add 3.12 to test runners

    @ziw-liu
    ziw-liu committed Oct 17, 2024
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  6. make features optional 

    this allows the widget to be used as a tracks viewer
    @ziw-liu
    ziw-liu committed Oct 17, 2024
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  7. fix fov name filtering

    @ziw-liu
    ziw-liu committed Oct 17, 2024
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  8. pin ncp to commit

    @ziw-liu
    ziw-liu committed Oct 17, 2024
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