rasterio can't find libgdal.so.36 when gdal, libgdal, and rasterio installed via conda-forge channel #324
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Hmm, I'm getting a compile error when running I'll try and see if I can fix the compile errors (looks like I'm using an incompatible version of rustc, see geoarrow/geoarrow-rs#716), so that I can reproduce this properly. But just to answer quickly, it might be best to package stac-rs on conda-forge to handle GDAL incompatibility issues (edit: see conda-forge/staged-recipes#28293) |
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Managed to compile after downgrading my rustc version from 1.82 to 1.80 using conda install -c conda-forge rioxarray libgdal-arrow-parquetand then I got this error: Traceback (most recent call last):
File "/home/user/mambaforge/envs/test/lib/python3.11/site-packages/xarray/backends/file_manager.py", line 211, in _acquire_with_cache_info
file = self._cache[self._key]
~~~~~~~~~~~^^^^^^^^^^^
File "/home/user/mambaforge/envs/test/lib/python3.11/site-packages/xarray/backends/lru_cache.py", line 56, in __getitem__
value = self._cache[key]
~~~~~~~~~~~^^^^^
KeyError: [<function open at 0x7f0f9ac28b80>, ('GTI:/home/user/items.parquet',), 'r', (('sharing', False),), 'ae2c44bb-1e02-4c90-a3e0-aacef4e57f5a']
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "rasterio/_base.pyx", line 310, in rasterio._base.DatasetBase.__init__
File "rasterio/_base.pyx", line 221, in rasterio._base.open_dataset
File "rasterio/_err.pyx", line 359, in rasterio._err.exc_wrap_pointer
rasterio._err.CPLE_AppDefinedError: Cannot find field location
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "/home/user/mambaforge/envs/test/lib/python3.11/site-packages/xarray/backends/api.py", line 671, in open_dataset
backend_ds = backend.open_dataset(
^^^^^^^^^^^^^^^^^^^^^
File "/home/user/mambaforge/envs/test/lib/python3.11/site-packages/rioxarray/xarray_plugin.py", line 58, in open_dataset
rds = _io.open_rasterio(
^^^^^^^^^^^^^^^^^^
File "/home/user/mambaforge/envs/test/lib/python3.11/site-packages/rioxarray/_io.py", line 1128, in open_rasterio
riods = manager.acquire()
^^^^^^^^^^^^^^^^^
File "/home/user/mambaforge/envs/test/lib/python3.11/site-packages/xarray/backends/file_manager.py", line 193, in acquire
file, _ = self._acquire_with_cache_info(needs_lock)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/user/mambaforge/envs/test/lib/python3.11/site-packages/xarray/backends/file_manager.py", line 217, in _acquire_with_cache_info
file = self._opener(*self._args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/user/mambaforge/envs/test/lib/python3.11/site-packages/rasterio/env.py", line 463, in wrapper
return f(*args, **kwds)
^^^^^^^^^^^^^^^^
File "/home/user/mambaforge/envs/test/lib/python3.11/site-packages/rasterio/__init__.py", line 355, in open
dataset = DatasetReader(path, driver=driver, sharing=sharing, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "rasterio/_base.pyx", line 312, in rasterio._base.DatasetBase.__init__
rasterio.errors.RasterioIOError: Cannot find field locationWas this the error you were getting? Doesn't seem related to not finding libgdal. |
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WOOPS sorry for the bad mre. Missed those dependencies. I get the same error and I don't think this is a rasterio/gdal packaging issue. I think it's probably some incompatibility between the geoparquet produced by The issue with libgdal not being found seems specific to my use of pixi to set up the conda environment. I think some environment variables are not being correctly set up to discover the correct GDAL potentially. in any case doesn't seem like an issue with packaging so closing |
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Solution to issue cannot be found in the documentation.
Issue
I'm trying to use this environment to read a stac-geoparquet with the new GTI driver that comes with gdal 3.10
then pip install
pip install stacrsI can use the GTI driver with a FlatGeoBuf
but not stac-geoparquet. idk why, but rasterio looks for the wrong libgdal.so.35, I have libgdal.so.36
Installed packages
Environment info
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