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Correct patient level flag of profile in genie db #11173

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alisman opened this issue Nov 7, 2024 · 2 comments
Open

Correct patient level flag of profile in genie db #11173

alisman opened this issue Nov 7, 2024 · 2 comments
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@alisman
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alisman commented Nov 7, 2024

SELECT patient_level
FROM genetic_profile
WHERE genetic_profile_id = '1585'

This profile SHOULD be patient level in genie database. It is sample right now.

@fuzhaoyuan
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It's the 'Distant Mets' generic assay of study 'GENIE BPC NSCLC v2.0-public'. In the description it is patient level and the equivalent clinical attribute of it is also patient level. Thank you!

@fuzhaoyuan
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Update:
The original meta file does not have 'patient_level' info and the data file is also constructed with sample identifier on top, not patient identifier as it should be.
@sheridancbio and data curation team have it fixed and re-imported so all good now. I'll update the cbio doc to prevent this in the future and then close this issue.

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