Problems with Pfam-A

[gerpinho]

Hi,
I´m trying to run traitar but I have problems with Pfam-A (is not found). I´m trying to download it but I can´t connect with the server (error 425 failed establish connection). Can you help me?

Thnks

Diego

[aweimann]

Thanks for your interest in Traitar! Have you run traitar pfam ? This will download the Pfam db to a folder of your choice.

[gerpinho]

Thanks for your help with database download!!! I have a new problem now. All results obtained in phenotype prediction were negative, even when I use the samples of the example folder, and the heatmap is white. I tried to analyze the samples in .fasta, .fna and .faa, but the results were the same.
I don't know where is the origin of the problem, maybe the Pfam download? Could you help me?
Thanks
Diego

[aweimann]

Maybe it's easier if you get in touch via email weimann [at] hhu.de It could be helpful if you describe the data a little bit more and please include the command you use to invoke traitar. .