Wengan error 1

[lesimonson]

Hi, I'm trying to align pacbio HiFi data with Illumina contigs using Wengan, but I'm getting an error message (error #1)... What causes error 1 in Wengan and how can I fix it?

[margaretc-ho]

Hi @adigenova I also have Error 1 and I can't seem to find in the issues what this means

The base command is

perl /sysapps/cluster/software/wengan/0.2/wengan.pl -x ontraw -a M -s ${gIllumina_pair1_fqgz},${gIllumina_pair2_fqgz} -l ${sourcedir}/PacBioCCSandminIONreads.cat.fq.gz -p Tc_WENGAN_PBminIONgIllumina -t 8 -g 65

and I get this error

/sysapps/cluster/software/wengan/0.2/bin/minia -in Tc_WENGAN_PBminIONgIllumina.minia_reads.41.txt -kmer-size 41 -abundance-min 2 -out Tc_WENGAN_PBminIONgIllumina.minia.41 -minimizer-size 10 -max-memory 5000 -nb-cores 8 2> Tc_WENGAN_PBminIONgIllumina.minia.41.err > Tc_WENGAN_PBminIONgIllumina.minia.41.log
make: *** [Tc_WENGAN_PBminIONgIllumina.minia.41.contigs.fa] Error 1

Please help? thanks!

[galicae]

@margaretc-ho you could try looking into the "Tc_WENGAN_PBminIONgIllumina.minia.41.log" file - that may have more info about the actual problem.