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log_network_2.txt
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log_network_2.txt
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:: Fetch protein network::
-- databases: [IntAct ToToRo]
-- ref-organism: #ppi_query.organism.Organism{:common-name nil, :taxon-id 6239, :scientific-name Caenorhabditis elegans}
-- proteins: [#ppi_query.protein.Protein{:organism #ppi_query.organism.Organism{:common-name nil, :taxon-id 6239, :scientific-name Caenorhabditis elegans}, :uniprotid Q18688} #ppi_query.protein.Protein{:organism #ppi_query.organism.Organism{:common-name nil, :taxon-id 6239, :scientific-name Caenorhabditis elegans}, :uniprotid Q20646}]
-- other-organisms: [#ppi_query.organism.Organism{:common-name Mouse, :taxon-id 10090, :scientific-name Mus musculus} #ppi_query.organism.Organism{:common-name Fission yeast, :taxon-id 284812, :scientific-name Schizosaccharomyces pombe (strain 972 / ATCC 24843)} #ppi_query.organism.Organism{:common-name Mouse-ear cress, :taxon-id 3702, :scientific-name Arabidopsis thaliana} #ppi_query.organism.Organism{:common-name Bovine, :taxon-id 9913, :scientific-name Bos taurus} #ppi_query.organism.Organism{:common-name Rat, :taxon-id 10116, :scientific-name Rattus norvegicus} #ppi_query.organism.Organism{:common-name Fruit fly, :taxon-id 7227, :scientific-name Drosophila melanogaster}]
/!\ Warning: No Psicquic client found for database ToToRo
== orthologs-direct-interactions finished. Fetched :
## Ortholog cache ## Reading from disk: ortholog-cache/A.thaliana/A.thaliana-C.elegans.npy
## Ortholog cache ## Reading from disk: ortholog-cache/B.taurus/B.taurus-C.elegans.npy
## Ortholog cache ## Reading from disk: ortholog-cache/C.elegans/C.elegans-R.norvegicus.npy
## Ortholog cache ## Reading from disk: ortholog-cache/C.elegans/C.elegans-D.melanogaster.npy
=== Mus musculus : 1 orthologs and 18 interactions found.
=== Schizosaccharomyces pombe (strain 972 / ATCC 24843) : 1 orthologs and 0 interactions found.
=== Arabidopsis thaliana : 1 orthologs and 8 interactions found.
=== Bos taurus : 1 orthologs and 0 interactions found.
=== Rattus norvegicus : 1 orthologs and 3 interactions found.
=== Drosophila melanogaster : 1 orthologs and 64 interactions found.
== 31 direct interactions fetched
Retry getByQuery 4
Retry countByQuery 4
Mus musculus : 27 secondary interactions found.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) : 0 secondary interactions found.
Arabidopsis thaliana : 10 secondary interactions found.
Bos taurus : 0 secondary interactions found.
Rattus norvegicus : 7 secondary interactions found.
Drosophila melanogaster : 33 secondary interactions found.
== 77 orthologs secondary interactions in total
== Orthologs interactions brought back to reference organism.
== 44 proteins to display in total
== 47 secondary interactions in reference organism
== 54 interactions to display in total
#########################################
### END FETCH PROTEIN NETWORK ###
#########################################
nodes
[{"label":"Q09974", "id":"Q09974"}, {"label":"Q20646", "id":"Q20646"},
{"label":"C7IVS4", "id":"C7IVS4"}, {"label":"P20792", "id":"P20792"},
{"label":"O77469", "id":"O77469"}, {"label":"Q20655", "id":"Q20655"},
{"label":"O76840", "id":"O76840"}, {"label":"O17218", "id":"O17218"},
{"label":"O45418", "id":"O45418"}, {"label":"P45897", "id":"P45897"},
{"label":"Q18406", "id":"Q18406"}, {"label":"O17972", "id":"O17972"},
{"label":"Q20308", "id":"Q20308"}, {"label":"Q18688", "id":"Q18688"},
{"label":"Q9BL34", "id":"Q9BL34"}, {"label":"P30628", "id":"P30628"},
{"label":"P50488", "id":"P50488"}, {"label":"Q9N2L7", "id":"Q9N2L7"},
{"label":"Q9BKQ8", "id":"Q9BKQ8"}, {"label":"G5EG62", "id":"G5EG62"},
{"label":"O02108", "id":"O02108"}, {"label":"O16259", "id":"O16259"},
{"label":"P02566", "id":"P02566"}, {"label":"P90978", "id":"P90978"},
{"label":"Q03563", "id":"Q03563"}, {"label":"Q9UAQ6", "id":"Q9UAQ6"},
{"label":"Q11184", "id":"Q11184"}, {"label":"G5EFL5", "id":"G5EFL5"},
{"label":"Q20365", "id":"Q20365"}, {"label":"O17927", "id":"O17927"},
{"label":"Q9XVV3", "id":"Q9XVV3"}, {"label":"Q9XU67", "id":"Q9XU67"},
{"label":"Q9XWG3", "id":"Q9XWG3"}, {"label":"Q9TVL3", "id":"Q9TVL3"},
{"label":"G5EBJ4", "id":"G5EBJ4"}, {"label":"G5ECP0", "id":"G5ECP0"},
{"label":"G5EEI8", "id":"G5EEI8"}, {"label":"Q7JP67", "id":"Q7JP67"},
{"label":"Q20234", "id":"Q20234"}, {"label":"Q09647", "id":"Q09647"},
{"label":"P34686", "id":"P34686"}, {"label":"Q27535", "id":"Q27535"},
{"label":"Q9GYS1", "id":"Q9GYS1"}]
edges
[{"from":"Q9TVL3",
"to":"Q18688",
"color":"orange",
"label":"Q99J95 (1.0)<->P11499 (1.0)",
"desc":"Mus musculus"},
{"from":"O17972",
"to":"G5EBJ4",
"color":"orange",
"label":"Q9QY53 (1.0)<->O89019 (1.0)",
"desc":"Mus musculus"},
{"from":"Q18688",
"to":"Q9BL34",
"color":"darkgreen",
"label":"P02828 (1.0)<->Q9VWD1 (1.0)",
"desc":"Drosophila melanogaster"},
{"from":"Q18688",
"to":"Q20234",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q20365",
"to":"Q18688",
"color":"orange",
"label":"O35963 (1.0)<->P11499 (1.0)",
"desc":"Mus musculus"},
{"from":"Q9N2L7",
"to":"Q18688",
"color":"darkgreen",
"label":"P52304 (1.0)<->P02828 (1.0)",
"desc":"Drosophila melanogaster"},
{"from":"G5EG62",
"to":"Q18688",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q18688",
"to":"Q18688",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"G5ECP0",
"to":"G5ECP0",
"color":"orange",
"label":"P59240 (1.0)<->P59240 (1.0)",
"desc":"Mus musculus"},
{"from":"Q18688",
"to":"O02108",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q18688",
"to":"O77469",
"color":"darkgreen",
"label":"P02828 (1.0)<->Q9V4B8 (1.0)",
"desc":"Drosophila melanogaster"},
{"from":"Q18688",
"to":"Q9XWG3",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q18688",
"to":"Q03563",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"P45897",
"to":"Q18688",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q18688",
"to":"O17927",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q18688",
"to":"G5EEI8",
"color":"purple",
"label":"P27323 (1.0)<->Q9SE33 (1.0)",
"desc":"Arabidopsis thaliana"},
{"from":"Q18688",
"to":"O16259",
"color":"darkgreen",
"label":"P02828 (1.0)<->Q9VPN5 (1.0)",
"desc":"Drosophila melanogaster"},
{"from":"Q9UAQ6",
"to":"Q18688",
"color":"orange",
"label":"P62821 (1.0)<->P11499 (1.0)",
"desc":"Mus musculus"},
{"from":"O17972",
"to":"G5ECP0",
"color":"orange",
"label":"Q9QY53 (1.0)<->P59240 (1.0)",
"desc":"Mus musculus"},
{"from":"Q18406",
"to":"Q18406",
"color":"darkgreen",
"label":"Q9XTM1 (1.0)<->Q9XTM1 (1.0)",
"desc":"Drosophila melanogaster"},
{"from":"Q18688",
"to":"Q11184",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q18688",
"to":"P50488",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q18688",
"to":"Q09974",
"color":"darkgreen",
"label":"P02828 (1.0)<->A1Z6M6 (1.0)",
"desc":"Drosophila melanogaster"},
{"from":"G5EBJ4",
"to":"Q18688",
"color":"orange",
"label":"O89019 (1.0)<->P11499 (1.0)",
"desc":"Mus musculus"},
{"from":"G5EFL5",
"to":"G5EFL5",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"G5EG62",
"to":"G5EG62",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q20655",
"to":"Q18688",
"color":"orange",
"label":"P63101 (1.0)<->P11499 (1.0)",
"desc":"Mus musculus"},
{"from":"Q18688",
"to":"O45418",
"color":"purple",
"label":"P27323 (1.0)<->Q38931 (1.0)",
"desc":"Arabidopsis thaliana"},
{"from":"Q18688",
"to":"O17218",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q18688",
"to":"P34686",
"color":"darkgreen",
"label":"P02828 (1.0)<->P48603 (1.0)",
"desc":"Drosophila melanogaster"},
{"from":"Q11184",
"to":"Q11184",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q09974",
"to":"C7IVS4",
"color":"darkgreen",
"label":"A1Z6M6 (1.0)<->P26019 (1.0)",
"desc":"Drosophila melanogaster"},
{"from":"Q18688",
"to":"Q9BKQ8",
"color":"darkgreen",
"label":"P02828 (1.0)<->Q9VR29 (1.0)",
"desc":"Drosophila melanogaster"},
{"from":"Q18688",
"to":"P20792",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q18688",
"to":"G5EFL5",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q18688",
"to":"Q18406",
"color":"darkgreen",
"label":"P02828 (1.0)<->Q9XTM1 (1.0)",
"desc":"Drosophila melanogaster"},
{"from":"G5EG62",
"to":"P02566",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q18688",
"to":"O76840",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"G5ECP0",
"to":"Q18688",
"color":"orange",
"label":"P59240 (1.0)<->P11499 (1.0)",
"desc":"Mus musculus"},
{"from":"O17972",
"to":"Q18688",
"color":"orange",
"label":"Q9QY53 (1.0)<->P11499 (1.0)",
"desc":"Mus musculus"},
{"from":"Q18688",
"to":"P90978",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q18688",
"to":"P02566",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q18688",
"to":"Q9XU67",
"color":"darkgreen",
"label":"P02828 (1.0)<->Q9VT19 (1.0)",
"desc":"Drosophila melanogaster"},
{"from":"Q11184",
"to":"Q20655",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q18688",
"to":"Q09647",
"color":"darkgreen",
"label":"P02828 (1.0)<->Q8IPB2 (1.0)",
"desc":"Drosophila melanogaster"},
{"from":"Q18688",
"to":"Q20308",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q9GYS1",
"to":"Q18688",
"color":"orange",
"label":"Q921E6 (1.0)<->P11499 (1.0)",
"desc":"Mus musculus"},
{"from":"Q18688",
"to":"Q9XVV3",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q18688",
"to":"C7IVS4",
"color":"darkgreen",
"label":"P02828 (1.0)<->P26019 (1.0)",
"desc":"Drosophila melanogaster"},
{"from":"G5EFL5",
"to":"Q9XWG3",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q18688",
"to":"Q27535",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"O02108",
"to":"Q9TVL3",
"color":"red",
"label":"",
"desc":"Caenorhabditis elegans"},
{"from":"Q18688",
"to":"P30628",
"color":"darkgreen",
"label":"P02828 (1.0)<->Q9XZ10 (1.0)",
"desc":"Drosophila melanogaster"},
{"from":"Q7JP67",
"to":"Q18688",
"color":"orange",
"label":"Q923S6 (1.0)<->P11499 (1.0)",
"desc":"Mus musculus"}]
ppi-query.network-graph-test=>
[:proto-repl-code-execution-extension
"proto-repl-charts"
{:name "Psicquic interactions",
:type "graph",
:data {:nodes ({:label "Q09974", :id "Q09974"}
{:label "Q20646", :id "Q20646"}
{:label "C7IVS4", :id "C7IVS4"}
{:label "P20792", :id "P20792"}
{:label "O77469", :id "O77469"}
{:label "Q20655", :id "Q20655"}
{:label "O76840", :id "O76840"}
{:label "O17218", :id "O17218"}
{:label "O45418", :id "O45418"}
{:label "P45897", :id "P45897"}
{:label "Q18406", :id "Q18406"}
{:label "O17972", :id "O17972"}
{:label "Q20308", :id "Q20308"}
{:label "Q18688", :id "Q18688"}
{:label "Q9BL34", :id "Q9BL34"}
{:label "P30628", :id "P30628"}
{:label "P50488", :id "P50488"}
{:label "Q9N2L7", :id "Q9N2L7"}
{:label "Q9BKQ8", :id "Q9BKQ8"}
{:label "G5EG62", :id "G5EG62"}
{:label "O02108", :id "O02108"}
{:label "O16259", :id "O16259"}
{:label "P02566", :id "P02566"}
{:label "P90978", :id "P90978"}
{:label "Q03563", :id "Q03563"}
{:label "Q9UAQ6", :id "Q9UAQ6"}
{:label "Q11184", :id "Q11184"}
{:label "G5EFL5", :id "G5EFL5"}
{:label "Q20365", :id "Q20365"}
{:label "O17927", :id "O17927"}
{:label "Q9XVV3", :id "Q9XVV3"}
{:label "Q9XU67", :id "Q9XU67"}
{:label "Q9XWG3", :id "Q9XWG3"}
{:label "Q9TVL3", :id "Q9TVL3"}
{:label "G5EBJ4", :id "G5EBJ4"}
{:label "G5ECP0", :id "G5ECP0"}
{:label "G5EEI8", :id "G5EEI8"}
{:label "Q7JP67", :id "Q7JP67"}
{:label "Q20234", :id "Q20234"}
{:label "Q09647", :id "Q09647"}
{:label "P34686", :id "P34686"}
{:label "Q27535", :id "Q27535"}
{:label "Q9GYS1", :id "Q9GYS1"}),
:options nil,
:edges ({:desc "Mus musculus",
:color "orange",
:from "Q9TVL3",
:label "Q99J95 (1.0)<->P11499 (1.0)",
:to "Q18688"}
{:desc "Mus musculus",
:color "orange",
:from "O17972",
:label "Q9QY53 (1.0)<->O89019 (1.0)",
:to "G5EBJ4"}
{:desc "Drosophila melanogaster",
:color "darkgreen",
:from "Q18688",
:label "P02828 (1.0)<->Q9VWD1 (1.0)",
:to "Q9BL34"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q18688",
:label "",
:to "Q20234"}
{:desc "Mus musculus",
:color "orange",
:from "Q20365",
:label "O35963 (1.0)<->P11499 (1.0)",
:to "Q18688"}
{:desc "Drosophila melanogaster",
:color "darkgreen",
:from "Q9N2L7",
:label "P52304 (1.0)<->P02828 (1.0)",
:to "Q18688"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "G5EG62",
:label "",
:to "Q18688"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q18688",
:label "",
:to "Q18688"}
{:desc "Mus musculus",
:color "orange",
:from "G5ECP0",
:label "P59240 (1.0)<->P59240 (1.0)",
:to "G5ECP0"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q18688",
:label "",
:to "O02108"}
{:desc "Drosophila melanogaster",
:color "darkgreen",
:from "Q18688",
:label "P02828 (1.0)<->Q9V4B8 (1.0)",
:to "O77469"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q18688",
:label "",
:to "Q9XWG3"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q18688",
:label "",
:to "Q03563"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "P45897",
:label "",
:to "Q18688"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q18688",
:label "",
:to "O17927"}
{:desc "Arabidopsis thaliana",
:color "purple",
:from "Q18688",
:label "P27323 (1.0)<->Q9SE33 (1.0)",
:to "G5EEI8"}
{:desc "Drosophila melanogaster",
:color "darkgreen",
:from "Q18688",
:label "P02828 (1.0)<->Q9VPN5 (1.0)",
:to "O16259"}
{:desc "Mus musculus",
:color "orange",
:from "Q9UAQ6",
:label "P62821 (1.0)<->P11499 (1.0)",
:to "Q18688"}
{:desc "Mus musculus",
:color "orange",
:from "O17972",
:label "Q9QY53 (1.0)<->P59240 (1.0)",
:to "G5ECP0"}
{:desc "Drosophila melanogaster",
:color "darkgreen",
:from "Q18406",
:label "Q9XTM1 (1.0)<->Q9XTM1 (1.0)",
:to "Q18406"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q18688",
:label "",
:to "Q11184"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q18688",
:label "",
:to "P50488"}
{:desc "Drosophila melanogaster",
:color "darkgreen",
:from "Q18688",
:label "P02828 (1.0)<->A1Z6M6 (1.0)",
:to "Q09974"}
{:desc "Mus musculus",
:color "orange",
:from "G5EBJ4",
:label "O89019 (1.0)<->P11499 (1.0)",
:to "Q18688"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "G5EFL5",
:label "",
:to "G5EFL5"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "G5EG62",
:label "",
:to "G5EG62"}
{:desc "Mus musculus",
:color "orange",
:from "Q20655",
:label "P63101 (1.0)<->P11499 (1.0)",
:to "Q18688"}
{:desc "Arabidopsis thaliana",
:color "purple",
:from "Q18688",
:label "P27323 (1.0)<->Q38931 (1.0)",
:to "O45418"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q18688",
:label "",
:to "O17218"}
{:desc "Drosophila melanogaster",
:color "darkgreen",
:from "Q18688",
:label "P02828 (1.0)<->P48603 (1.0)",
:to "P34686"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q11184",
:label "",
:to "Q11184"}
{:desc "Drosophila melanogaster",
:color "darkgreen",
:from "Q09974",
:label "A1Z6M6 (1.0)<->P26019 (1.0)",
:to "C7IVS4"}
{:desc "Drosophila melanogaster",
:color "darkgreen",
:from "Q18688",
:label "P02828 (1.0)<->Q9VR29 (1.0)",
:to "Q9BKQ8"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q18688",
:label "",
:to "P20792"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q18688",
:label "",
:to "G5EFL5"}
{:desc "Drosophila melanogaster",
:color "darkgreen",
:from "Q18688",
:label "P02828 (1.0)<->Q9XTM1 (1.0)",
:to "Q18406"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "G5EG62",
:label "",
:to "P02566"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q18688",
:label "",
:to "O76840"}
{:desc "Mus musculus",
:color "orange",
:from "G5ECP0",
:label "P59240 (1.0)<->P11499 (1.0)",
:to "Q18688"}
{:desc "Mus musculus",
:color "orange",
:from "O17972",
:label "Q9QY53 (1.0)<->P11499 (1.0)",
:to "Q18688"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q18688",
:label "",
:to "P90978"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q18688",
:label "",
:to "P02566"}
{:desc "Drosophila melanogaster",
:color "darkgreen",
:from "Q18688",
:label "P02828 (1.0)<->Q9VT19 (1.0)",
:to "Q9XU67"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q11184",
:label "",
:to "Q20655"}
{:desc "Drosophila melanogaster",
:color "darkgreen",
:from "Q18688",
:label "P02828 (1.0)<->Q8IPB2 (1.0)",
:to "Q09647"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q18688",
:label "",
:to "Q20308"}
{:desc "Mus musculus",
:color "orange",
:from "Q9GYS1",
:label "Q921E6 (1.0)<->P11499 (1.0)",
:to "Q18688"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q18688",
:label "",
:to "Q9XVV3"}
{:desc "Drosophila melanogaster",
:color "darkgreen",
:from "Q18688",
:label "P02828 (1.0)<->P26019 (1.0)",
:to "C7IVS4"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "G5EFL5",
:label "",
:to "Q9XWG3"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "Q18688",
:label "",
:to "Q27535"}
{:desc "Caenorhabditis elegans",
:color "red",
:from "O02108",
:label "",
:to "Q9TVL3"}
{:desc "Drosophila melanogaster",
:color "darkgreen",
:from "Q18688",
:label "P02828 (1.0)<->Q9XZ10 (1.0)",
:to "P30628"}
{:desc "Mus musculus",
:color "orange",
:from "Q7JP67",
:label "Q923S6 (1.0)<->P11499 (1.0)",
:to "Q18688"})}}]