Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

πŸ“ "Matrix of data [Γ—] pipeline configs coloured by status is automatically added to PRs." #7

Open
2 tasks
shnizzedy opened this issue Aug 30, 2022 · 0 comments

Comments

@shnizzedy
Copy link
Member

shnizzedy commented Aug 30, 2022

Related problem

We have a GitHub Check in place (e.g.,
"Some checks were not successful: Smoke tests"), but those require a couple clicks to see details (click the βœ”οΈ, 🟑, or ❌; then click Details).

Proposed feature

Add an issue comment back to the pull request that triggered the smoke test with a table visualization of the smoke test results, e.g., something like

human pipelines
C-PAC (standard image)10194362014113315499636999913884955NDARAA504CRNNDARAA947ZG5NDARAB348EWRNDARAB458VK9NDARAD481FXFNDARAV894XWDNDARCA186WGH00254280025429002544800254520025453
defaultβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
abcd-optionsβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
anat-onlyβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
benchmark-ANTSβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
benchmark-FNIRTβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
blankβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
ccs-optionsβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
fmriprep-optionsβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
fx-optionsβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
ndmgβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
preprocβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
C-PAC:lite10194362014113315499636999913884955NDARAA504CRNNDARAA947ZG5NDARAB348EWRNDARAB458VK9NDARAD481FXFNDARAV894XWDNDARCA186WGH00254280025429002544800254520025453
defaultβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
abcd-optionsβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
anat-onlyβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
benchmark-ANTSβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
benchmark-FNIRTβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
blankβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
ccs-optionsβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
fmriprep-optionsβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
fx-optionsβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
ndmgβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
preprocβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
C-PAC:ABCD-HCP10194362014113315499636999913884955NDARAA504CRNNDARAA947ZG5NDARAB348EWRNDARAB458VK9NDARAD481FXFNDARAV894XWDNDARCA186WGH00254280025429002544800254520025453
defaultβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
abcd-optionsβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
anat-onlyβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
benchmark-ANTSβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
benchmark-FNIRTβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
blankβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
ccs-optionsβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
fmriprep-optionsβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
fx-optionsβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
ndmgβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
preprocβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
C-PAC:fMRIPrep-LTS10194362014113315499636999913884955NDARAA504CRNNDARAA947ZG5NDARAB348EWRNDARAB458VK9NDARAD481FXFNDARAV894XWDNDARCA186WGH00254280025429002544800254520025453
defaultβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
abcd-optionsβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
anat-onlyβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
benchmark-ANTSβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
benchmark-FNIRTβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
blankβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
ccs-optionsβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
fmriprep-optionsβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
fx-optionsβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
ndmgβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
preprocβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
nonhuman primate pipelines
C-PAC (standard image)03210203210603216403216703213003212822152312032191032195
monkeyβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
monkey-ABCDβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈN/AN/AN/AN/A
nhp-macaqueβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
C-PAC:lite03210203210603216403216703213003212822152312032191032195
monkeyβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
monkey-ABCDβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈN/AN/AN/AN/A
nhp-macaqueβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
C-PAC:fMRIPrep-LTS03210203210603216403216703213003212822152312032191032195
monkeyβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
monkey-ABCDβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈN/AN/AN/AN/A
nhp-macaqueβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
C-PAC:ABCD-HCP03210203210603216403216703213003212822152312032191032195
monkeyβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
monkey-ABCDβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈN/AN/AN/AN/A
nhp-macaqueβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈβœ”οΈ
rodent pipelines
C-PAC (standard image)4007
rodentβœ”οΈ
C-PAC:lite4007
rodentβœ”οΈ
C-PAC:fMRIPrep-LTS4007
rodentβœ”οΈ
C-PAC:ABCD-HCP4007
rodentβœ”οΈ

Acceptance criteria

  • Smoke tests comment back to PR once they all complete (pass or fail)
  • on push: 1 sub per dataset, only on main image

Alternatives

No response

Additional context

Smoke

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
Status: Todo
Development

No branches or pull requests

1 participant