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🐛 Templates don't match between monkey and nhp-macaque #26

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shnizzedy opened this issue Mar 10, 2022 · 0 comments
Open
1 task

🐛 Templates don't match between monkey and nhp-macaque #26

shnizzedy opened this issue Mar 10, 2022 · 0 comments
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bug Something isn't working user-reported

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@shnizzedy
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Describe the bug

monkey

anatomical_preproc:
  acpc_alignment:
    FOV_crop: flirt
    T1w_brain_ACPC_template: /cpac_templates/MacaqueYerkes19_T1w_0.5mm_brain.nii.gz
    T2w_ACPC_template: /cpac_templates/MacaqueYerkes19_T2w_0.5mm.nii.gz
    T2w_brain_ACPC_template: /cpac_templates/MacaqueYerkes19_T2w_0.5mm_brain.nii.gz
voxel_mirrored_homotopic_connectivity:
 symmetric_registration:
    T1w_brain_template_symmetric_for_resample: /cpac_templates/resources/MacaqueYerkes19_T1w_1.0mm.nii.gz

nhp-macaque

anatomical_preproc:
  acpc_alignment:
    FOV_crop: robustfov
    T1w_brain_ACPC_template: /usr/share/fsl/5.0/data/standard/MNI152_T1_1mm_brain.nii.gz
    T2w_ACPC_template:
    T2w_brain_ACPC_template:
voxel_mirrored_homotopic_connectivity:
  symmetric_registration:
    T1w_brain_template_symmetric_for_resample: /cpac_templates/MacaqueYerkes19_T1w_1.0mm.nii.gz

To reproduce

No response

Expected behavior

Either match the templates or document the intentional differences

Acceptance criteria

  • match the templates or document the intentional differences

Screenshots

No response

C-PAC version

v1.8.2, v1.8.3

Container platform

No response

Docker and/or Singularity version(s)

No response

Additional context

No response

@shnizzedy shnizzedy added bug Something isn't working user-reported labels Mar 10, 2022
@shnizzedy shnizzedy transferred this issue from FCP-INDI/C-PAC Aug 8, 2024
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