Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

🚚 Move C-PAC templates from C-PAC into this repository #10

Open
3 tasks
shnizzedy opened this issue Apr 12, 2022 · 0 comments
Open
3 tasks

🚚 Move C-PAC templates from C-PAC into this repository #10

shnizzedy opened this issue Apr 12, 2022 · 0 comments
Labels
devops enhancement New feature or request

Comments

@shnizzedy
Copy link
Member

Related problem

C-PAC installs a bunch of templates in a bunch of places:

https://github.com/FCP-INDI/C-PAC/blob/ecf297738117b09a3534543c16629066767ca098/Dockerfile#L143-L144
https://github.com/FCP-INDI/C-PAC/blob/ecf297738117b09a3534543c16629066767ca098/Dockerfile#L191
https://github.com/FCP-INDI/C-PAC/blob/ecf297738117b09a3534543c16629066767ca098/Dockerfile#L238-L239
https://github.com/FCP-INDI/C-PAC/blob/ecf297738117b09a3534543c16629066767ca098/Dockerfile#L246

Proposed feature

Instead of importing each of these sets of templates separately,

path in container source
/ants_template/oasis ANTs/ANTsR Brain Templates: OASIS.zip
/ndmg_atlases Neuroparc v1.0: Baseline
/opt/dcan-tools/pipeline/global/templates DCAN-HCP Pipelines: global/templates
/usr/share/data/fsl-mni152-templates fsl-mni152-templates – MNI152 stereotaxic brain templates for FSL
/usr/share/fsl/5.0/data/atlases fsl-atlases – FSL’s MNI152 standard space stereotaxic brain atlases http://fcon_1000.projects.nitrc.org/indi/cpac_resources.tar.gz
/usr/share/fsl/5.0/data/standard http://fcon_1000.projects.nitrc.org/indi/cpac_resources.tar.gz

use this repository's Dockerfile to collect them all, then just copy them from ghcr.io/fcp-indi/c-pac_templates into C-PAC

Acceptance criteria

  • All of the templates included in C-PAC are included in this repository
  • templates are removed from the main repo
  • templates are copied from ghcr.io/fcp-indi/c-pac_templates into C-PAC in each C-PAC Dockerfile

Alternatives

No response

Additional context

Related: #3

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
devops enhancement New feature or request
Projects
Status: No status
Development

No branches or pull requests

1 participant