v0.14.4

0.14.4 - 2022-10-24

Bug Fixes

• Fix get_theme calls to prepare for napari 0.4.17 (#729)
• Fix sentry tests (#742)
• Fix reporting error in load settings from the drive (#725)
• Fix saving pipeline from GUI (#756)
• Fix profile export/import dialogs (#761)
• Enable the "Compare" button if ROI is available (#765)
• Fix bug in cut with ROI to not make black artifacts (#767)

Features

• Load alternatives labeling when opening PartSeg projects in napari (#731)
• Add option to toggle scale bar (#733)
• Allow customizing the settings directory using the PARTSEG_SETTINGS_DIR environment variable (#751)
• Separate recent algorithms from general application settings (#752)
• Add multiple otsu as threshold method with selection range of components (#710)
• Add function to load components from Mask Segmentation with a background in ROI Analysis (#768)

Miscellaneous Tasks

• Prepare pyinstaller configuration for napari 0.4.17 (#748)
• Add ruff linter (#754)

Testing

• Add new build and inspect wheel action (#747)

Build

• Bump actions/checkout from 2 to 3 (#716)
• Bump actions/download-artifact from 1 to 3 (#709)

Changes:

• 9e742fc Prepare 0.14.4 release (#770)
• a1f8bba feat: Add function to load components from Mask Segmentaion with background in ROI Analysis (#768)
• 9986dc4 fix: Fix bug in cut with roi to do not make black artifacts (#767)
• 53ec234 fix: Enable compare button if ROI is avaliable (#765)
• fceb043 fix: Fix profile export/import dialogs (#761)
• 214320e [pre-commit.ci] pre-commit autoupdate (#760)
• 7f59296 Report if in main thread when auto report errors is enabled
• 23f8ce4 fix: Fix saving pipeline from GUI (#756)
• a40de4e chore: Add ruff linter (#754)
• cb16b0e feat: Add multiple otsu as threshold method with selection range of components (#710)

See More

• 54958d1 feat: Separate recent algorithms from general application settings (#752)
• ef43db3 bugfix: Fix reporting error in load settings from drive (#725)
• eab244f feat: Allow customize settings directory using the PARTSEG_SETTINGS_DIR environment variable (#751)
• fd6e600 chore: Prepare pyinstaller configuration for napari 0.4.17 (#748)
• ce084a3 test: Add new build and inspect wheel action (#747)
• 6b6dbdd [pre-commit.ci] pre-commit autoupdate (#737)
• 99aaaec Ignore error when locale.setlocale fails with locale.Error (#743)
• 609c542 bugfix: fix sentry tests (#742)
• de58c31 build(deps): bump actions/download-artifact from 1 to 3 (#709)
• 531e0f6 feat: Add option to toggle scale bar (#733)
• 5e765df feat: Load alternatives labeling when open PartSeg projects in napari (#731)
• 87dab17 fix: Fix get_theme calls to prepare for napari 0.4.17 (#729)
• a8697a2 Bump bundle requirements (#728)
• 43f27ca [pre-commit.ci] pre-commit autoupdate (#721)
• 3d5695f Increase max value in SearchLabel widget (#715)
• 50c69e4 [pre-commit.ci] pre-commit autoupdate (#718)
• 0e99126 Bump packages versions for bundle (#717)
• da129c9 build(deps): bump actions/checkout from 2 to 3 (#716)
• 1002409 Fix for napari repo, prepare for napari 0.4.17 (#712)
• 3961653 [pre-commit.ci] pre-commit autoupdate (#700)
• 7bb4826 Add missing requirements to setup.cfg (#696)
• 08696b8 fix typos

This list of changes was auto generated.

v0.14.3

0.14.3

Bug Fixes

• Fix lack of rendering ROI when load image from segmentation (#694)
• Fix running ROI extraction from napari widget (#695)
• Delay setting image if an algorithm is still running (#627)
• Wrong error report when no component is found in restartable segmentation algorithm. (#633)
• Fix the process of building documentation (#653)

Refactor

• Clean potential vulnerabilities (#630)

Testing

• Add more tests for common GUI elements (#622)
• Report coverage per package. (#639)
• Update conda environment to not use PyQt5 in test (#646)
• Add tests files to calculate coverage (#655)

Changes:

• 41e6ff6 update changelog
• ca3f1cd Fix running segmentation from napari widget (#695)
• b7c185f Fix lack of rendering ROI when load image from segmentation (#694)
• f881a8a Bump bundle requirements versions (#693)
• 8cce4bc [pre-commit.ci] pre-commit autoupdate (#689)
• 515710c [pre-commit.ci] pre-commit autoupdate (#685)
• 14294f7 [pre-commit.ci] pre-commit autoupdate (#670)
• 887f6e4 Bump requirements (#676)
• 2f04409 Fix failing CI (#673)
• 1993c89 allow manual dispatch tests

See More

• 566ad98 build(deps): bump pyinstaller from 5.1 to 5.2 in /requirements (#667)
• bc9b87b [pre-commit.ci] pre-commit autoupdate (#666)
• ad36688 build(deps): bump mahotas from 1.4.12 to 1.4.13 in /requirements (#662)
• a1edc33 build(deps): bump lxml from 4.9.0 to 4.9.1 in /requirements (#665)
• 13b151d build(deps): bump numpy from 1.22.4 to 1.23.0 in /requirements (#660)
• d3a5a35 build(deps): bump sentry-sdk from 1.5.12 to 1.6.0 in /requirements (#659)
• ee0c304 test: Add tests files to calcualate coverage (#655)
• d6e1a91 Bump bundle requirements (#654)
• 2f14925 fix: Fix process of build documentation (#653)
• 33ac6a0 build(deps): bump pyqt5 from 5.15.6 to 5.15.7 in /requirements (#652)
• 2e68055 [pre-commit.ci] pre-commit autoupdate (#650)
• fecf346 build(deps): bump actions/setup-python from 3 to 4 (#648)
• 6dd2096 build(deps): bump requests from 2.27.1 to 2.28.0 in /requirements (#647)
• bd23f87 [pre-commit.ci] pre-commit autoupdate (#642)
• 1c87c66 test: Update conda environment to not use PyQt5 in test (#646)
• 84fea4e test: Report coverage per package. (#639)
• 7e3b967 build(deps): bump codecov/codecov-action from 1 to 3 (#637)
• ce90828 Fix pre tests (#635)
• cc8412a build(deps): bump tifffile from 2022.4.28 to 2022.5.4 in /requirements (#619)
• c79f1f3 fix: Wrong error report whe no component is found in restatrtable segmentation algorithm. (#633)
• 1453051 refactor: clean potential vulnerabilities (#630)
• 1d6ef79 build(deps): bump pyinstaller from 5.0.1 to 5.1 in /requirements (#629)
• ba0e8dd build(deps): bump qtpy from 2.0.1 to 2.1.0 in /requirements (#613)
• c7cfebb Test if pyinstaller bundle work for --pre tests (#628)
• 0a38fc6 test: Add more tests for common GUI elements (#622) [ #623 ]
• fdc5e37 fix: Delay setting image if an algorithm is still running (#627)
• 0498f17 Add issue templates (#626)
• 9caf476 [pre-commit.ci] pre-commit autoupdate (#624)

This list of changes was auto generated.

v0.14.2

0.14.2

Bug Fixes

• Fix bug in save label colors between sessions (#610)
• Register PartSeg plugins before starting napari widgets. (#611)
• Mouse interaction with components works again after highlight. (#620)

Refactor

• Limit test run (#603)
• Filter and solve warnings in tests (#607)
• Use QAbstractSpinBox.AdaptiveDecimalStepType in SpinBox instead of hardcoded bounds (#616)
• Clean and test PartSeg.common_gui.universal_gui_part (#617)

Testing

• Speedup test by setup cache for pip (#604)
• Setup cache for azure pipelines workflows (#606)

Changes:

• a9e7539 doc: Update changelog (#621)
• a269888 fix: Mouse interaction with components work again after highlight. (#620)
• 6c0701d build(deps): bump sentry-sdk from 1.5.10 to 1.5.11 in /requirements (#615)
• da5e19f refactor: clean and test PartSeg.common_gui.universal_gui_part (#617) [ #618 ]
• 03d9c1f fix: Register PartSeg plugins before start napari widgets. (#611)
• e2daa4c refactor: Use QAbstractSpinBox.AdaptiveDecimalStepType in SpinBox instead of hardcoded bounds (#616)
• 3f9c551 [pre-commit.ci] pre-commit autoupdate (#612)
• cbf4ae7 test: Setup cache for azure pipelines workflows (#606)
• 1528ab2 fix: Fix bug in save label colors between sessions (#610)
• 6e5fee8 refactor: Filter and solve warnings in tests (#607)

See More

• 270b9e0 test: Speedup test by setup cache for pip (#604)
• 3786918 refactor: Limit test run (#603)
• 2007b69 bump requirements (#602)

This list of changes was auto generated.

v0.14.1

0.14.1

Bug Fixes

• Update build wheels and sdist to have proper version tag (#583)
• Fix removing the first measurement entry in the napari Measurement widget (#584)
• Fix compatibility bug for conda Pyside2 version (#595)
• Error when synchronization is loaded, and newly loaded image has different dimensionality than currently loaded. (#598)

Features

• Use pygments for coloring code in exception window (#591)
• Add option to calculate Measurement per Mask component (#590)

Refactor

• Refactor the creation batch plan widgets and add tests for it (#587)
• Drop napari bellow 0.4.12 (#592)
• Update the order of ROI Mask algorithms to be the same as in older PartSeg versions (#600)

Changes:

• 363ed39 refactor: Update the order of ROI Mask algorithms to be the same as in older PartSeg versions (#600)
• 90cca9b update changelog (#599)
• fe948dd fix: Error when synchronization is loaded and new iloaded image has different dimensionality than currently loaded. (#598)
• e9018e9 fix: Fix compatybility bug for conda Pyside2 version (#595)
• 6c6ccc4 feat: Add option to calculate Measurement per Mask component (#590)
• d519d3a feat: Use pygments for coloring code in exception window (#591)
• 3dcadf8 build(deps): bump pyinstaller from 4.10 to 5.0 in /requirements (#586)
• dc52158 refactor: Drop napari bellow 0.4.12 (#592)
• 2c26399 refactor: Refactor the create batch plan widgets and add test for it (#587)
• 7a86ed2 build(deps): bump simpleitk from 2.1.1 to 2.1.1.2 in /requirements (#589)

See More

• 39f88a9 fix: Fix removing the first measurement entry in the napari Measurement widget (#584)
• adf87c9 fix: Update build wheels and sdist to have proper version tag (#583)
• a15cdeb build(deps): bump partsegcore-compiled-backend from 0.13.11 to 0.14.0 in /requirements (#582)

This list of changes was auto generated.

v0.14.0

0.14.0

Bug Fixes

• Fix "Show selected" rendering mode in PartSeg ROI Mask (#565)
• Add access by operator [] to pydantic.BaseModel base structures for keeping backward compatibility (#579)

Features

• Allow setting zoom factor from the interface in Search Label napari plugin (#538)
• Add controlling of zoom factor of search ROI in main GUI (#540)
• Better serialization mechanism allow for declaration data structure migration locally (#462)
• Make `*.obsep" file possible to load in PartSeg Analysis (#564)
• Add option to extract measurement profile or ROI extraction profile from the batch plan (#568)
• Allow import calculation plan from batch result excel file (#567)
• Improve error reporting when failing to deserialize data (#574)
• Launch PartSeg GUI from napari #581

Refactor

• Store PartSegImage.Image channels as separated arrays (#554)
• Remove deprecated modules. (#429)
• Switch serialization backend to nme (#569)

Testing

• Add test of creating AboutDialog (#539)
• Setup test for python 3.10. Disable class_generator test for this python (#570)

Changes:

• 03f60b4 doc: Update changelog and add new badges to readme (#580)
• 3d6f9b1 [pre-commit.ci] pre-commit autoupdate (#572)
• 0f31f06 feat: Launch PartSeg GUI from napari (#581)
• e31d28d bugfix: Add access by operator [] to pydantic.BaseModel base structures for keep backward compatybility (#579)
• c0db122 feat: Improve error reporting when fail to deserialize data (#574)
• 607e4d2 Limit simpleitk versions (#577)
• 22b207f test: Setup test for python 3.10. Disable class_generator test for this python (#570)
• 908d9ba refactor: Switch serialization backen to nme (#569)
• 97e32b2 feat: Allow import calculation plan from batch result excel file (#567)
• 22bbdec remove obsolete console_script

See More

• 1216219 feat: Add option to extract meaurement profile or roi extraction profile from batch plan (#568)
• 507beca build(deps): bump sentry-sdk from 1.5.7 to 1.5.8 in /requirements (#557)
• 7633038 feat: Make `*.obsep" file possible to load in PartSeg Analysis (#564)
• 5b9576c fix: Fix "Show selected" rendering mode in PartSeg ROI Mask (#565)
• 03136d6 Clean azure pipelines configuration (#566)
• 743d984 [pre-commit.ci] pre-commit autoupdate (#558)
• 4979a6d Remove commented out code (#563)
• 56fd22d refactor: Remove deprecated modules. (#429)
• ec50e86 build(deps): bump sympy from 1.10 to 1.10.1 in /requirements (#556)
• b08e0bd feat: Better serialization mechanism allow for declaration data structure migration locally (#462)
• fc651ed build(deps): bump tifffile from 2022.2.9 to 2022.3.25 in /requirements (#562)
• a99582e build(deps): bump sphinx from 4.4.0 to 4.5.0 in /requirements (#561)
• f687b82 refactor: store PartSegImage.Image channels as separated arrays (#554)
• df7c54d [pre-commit.ci] pre-commit autoupdate (#552)
• 5e2a7b8 Bump bundle requirements (#548)
• 2440e1b build(deps): bump pillow from 9.0.0 to 9.0.1 in /requirements (#549)
• 0e8fc0f build(deps): bump pyinstaller from 4.8 to 4.10 in /requirements (#545)
• 33dac4f Add test workflow to find deprecations in napari main repository (#542)
• 099b03f feat: Add controling of zoom factor of search ROI in main GUI (#540)
• b81fb09 test: Add test of creating AboutDialog (#539)
• b0f29ad feat: Allow to set zoom factor from interface in Search Label napari plugin (#538)
• 79869cf prepare test for napari 0.4.14 (#517)
• 31e0127 Apply non esentail parts of better serialization PR #462 (#533)
• dd95a47 Fix deprecations (#531)
• d1a64ee build(deps): bump sentry-sdk from 1.5.3 to 1.5.4 in /requirements (#515)
• ca96437 build(deps): bump qtpy from 2.0.0 to 2.0.1 in /requirements (#522)
• ecedd96 build(deps): bump tifffile from 2021.11.2 to 2022.2.2 in /requirements (#523)
• 3daf45d build(deps): bump numpy from 1.22.1 to 1.22.2 in /requirements (#524)
• 979d6f6 build(deps): bump oiffile from 2021.6.6 to 2022.2.2 in /requirements (#521)
• f47576b [pre-commit.ci] pre-commit autoupdate (#520)
• 4fe701b Not use GabrielBB/xvfb-action on non linux systems (#519)
• d7dfdbb build(deps): bump pandas from 1.3.5 to 1.4.0 in /requirements (#514)
• 5ad4483 build(deps): bump ipython from 8.0.0 to 8.0.1 in /requirements (#513)
• cf69bc0 build(deps): bump sentry-sdk from 1.5.2 to 1.5.3 in /requirements (#512)

This list of changes was auto generated.

v0.13.15

0.13.15

Bug Fixes

• Using translation instead of translation_grid for shifting layers. (#474)
• Bugs in napari plugins (#478)
• Missing mask when using roi extraction from napari (#479)
• Fix segmentation fault on macos machines (#487)
• Fixes for napari 0.4.13 (#506)

Documentation

• Create 0.13.15 release (#511)
• Add categories and preview page workflow for the napari hub (#489)

Features

• Assign properties to mask layer in napari measurement widget (#480)

Build

• Bump qtpy from 1.11.3 to 2.0.0 in /requirements (#498)
• Bump pydantic from 1.8.2 to 1.9.0 in /requirements (#496)
• Bump sentry-sdk from 1.5.1 to 1.5.2 in /requirements (#497)
• Bump sphinx from 4.3.1 to 4.3.2 in /requirements (#500)
• Bump pyinstaller from 4.7 to 4.8 in /requirements (#502)
• Bump pillow from 8.4.0 to 9.0.0 in /requirements (#501)
• Bump requests from 2.26.0 to 2.27.1 in /requirements (#495)
• Bump numpy from 1.21.4 to 1.22.0 in /requirements (#499)
• Bump numpy from 1.22.0 to 1.22.1 in /requirements (#509)
• Bump sphinx from 4.3.2 to 4.4.0 in /requirements (#510)

Changes:

• 1c83fb7 Create 0.13.15 release (#511)
• 637f9be fix: Fixes for napari 0.4.13 (#506)
• 7413e5c build(deps): bump sphinx from 4.3.2 to 4.4.0 in /requirements (#510)
• 23d35c3 build(deps): bump numpy from 1.22.0 to 1.22.1 in /requirements (#509)
• a1384a4 Update windows version from 2016 to 2019 in azure pipelines (#508)
• 62450af Force utf-8 usage for encoding files (#504)
• b042ad9 doc: Add categories and preview page workflow for the napari hub (#489)
• a50e41d [pre-commit.ci] pre-commit autoupdate (#492)
• 67efa3e build(deps): bump numpy from 1.21.4 to 1.22.0 in /requirements (#499)
• 9b77313 build(deps): bump requests from 2.26.0 to 2.27.1 in /requirements (#495)

See More

• 18dd8ec build(deps): bump pillow from 8.4.0 to 9.0.0 in /requirements (#501)
• ca9908f build(deps): bump pyinstaller from 4.7 to 4.8 in /requirements (#502)
• a00599e build(deps): bump sphinx from 4.3.1 to 4.3.2 in /requirements (#500)
• 6253008 build(deps): bump sentry-sdk from 1.5.1 to 1.5.2 in /requirements (#497)
• 9aeefe2 build(deps): bump pydantic from 1.8.2 to 1.9.0 in /requirements (#496)
• 6da4d19 build(deps): bump qtpy from 1.11.3 to 2.0.0 in /requirements (#498)
• 00594df dependabot fix part 2
• cf5ff33 Fix dependabot configuration (#494)
• 4451f4c [pre-commit.ci] pre-commit autoupdate (#490)
• a4edff1 fix: Fix segmentation fault on macos machines (#487)
• 8c658bd Update to actions/checkout@v2 in workflows (#486)
• 83e364c Update version of libraries in bundle (#482)
• 603758f feat: Assign properties to mask layer in napari measurement widget (#480)
• 4f5eda2 fix: missing mask when using roi extraction from napari (#479)
• d14b136 fix: Bugs in napari plugins (#478)
• 744893e fix mask marking and component highlight (#477)
• 354390a [pre-commit.ci] pre-commit autoupdate (#476)
• 3698eeb fix PARTSEG-FE (#475)
• 0ef2d1a [pre-commit.ci] pre-commit autoupdate (#461)
• af171a1 fix: Using translation instead of translation_grid for shifting layers. (#474)

This list of changes was auto generated.

v0.13.14

0.13.14

Bug Fixes

• ROI alternative representation (#471)
• Change additive to translucent in rendering ROI and Mask (#472)

Features

• Add morphological watershed segmentation (#469)
• Add Bilateral image filter (#470)

Changes:

• 317b3de Update changelog (#473)
• 346c717 feat: Add Bilateral image filter (#470)
• 79aa3aa fix: change additive to transcluent in rendeerin ROI and Mask (#472)
• 8552d03 fix: ROI aternative reopresentation (#471)
• f617a72 feat: Add morphological watersheed segmentation (#469)

This list of changes was auto generated.

v0.13.13

0.13.13

Bug Fixes

• Fix bugs in the generation process of the changelog for release. (#428)
• Restoring ROI on home button click in compare viewer (#443)
• Fix Measurement name prefix in bundled PartSeg. (#458)
• Napari widgets registration in pyinstaller bundle (#465)
• Hide points button if no points are loaded, hide Mask checkbox if no mask is set (#463)
• Replace Label data instead of adding/removing layers - fix blending layers (#464)

Features

• Add threshold information in layer annotation in the Multiple Otsu ROI extraction method (#430)
• Add option to select rendering method for ROI (#431)
• Add callback mechanism to ProfileDict, live update of ROI render parameters (#432)
• Move the info bar on the bottom of the viewer (#442)
• Add options to load recent files in multiple files widget (#444)
• Add ROI annotations as properties to napari labels layer created by ROI Extraction widgets (#445)
• Add signals to ProfileDict, remove redundant synchronization mechanisms (#449)
• Allow ignoring updates for 21 days (#453)
• Save all components if no components selected in mask segmentation (#456)
• Add modal dialog for search ROI components (#459)
• Add full measurement support as napari widget (#460)
• Add search labels as napari widget (#467)

Refactor

• Export common code for load/save dialog to one place (#437)
• Change most of call QFileDialog to more generic code (#440)

Testing

• Add test for PartSeg.common_backend module (#433)

Changes:

• 9fc15bb Update changelog (#468)
• 2fb65ae feat: Add search labels as napari widget (#467)
• 9cac2ab feat: Add full measurement support as napari widget (#460)
• 76e588d fix: Replace Label data instead of adding/removing layers - fix blending layers (#464)
• 0cb9261 fix: Hide points button if no points are loaded, hide Mask checkbox if no mask is set (#463)
• c60816e fix: napari widgets registration in pyinstaller bundle (#465)
• 5e812d0 feat: Add modal dialog for search ROI components (#459)
• 4acf81f fix: Fix Measurement name prefix in bundled PartSeg. (#458)
• a94a698 feat: Save all components if no components selected in mask segmentation (#456)
• 6f22871 Fix try of removing ignore.txt if not exists (#455)

See More

• e79baea [pre-commit.ci] pre-commit autoupdate (#448)
• c2b8949 feat: Allow ignore updates for 21 days (#453)
• 1c9ebab feat: Add singals to ProfileDict, remove redundant synchronization mechanisms (#449)
• dedd823 Add missed call of reset_choices in napari mask create widget (#452)
• 19ee181 Remove roi as parameter of ProjectInfoBase (#447)
• 814e5c1 Last files in multiple load dialog (#446)
• 06dec2d feat: Add ROI annotations as properties to napari labels layer created by ROI Extraction widgets (#445)
• c6b5af9 feat: Add options to load recent files in multiple files widget (#444)
• 9cc44ba fix: Restoring ROI on home button click in compare viewer (#443)
• f13903d feat: Move info bar on the bottom of viewer (#442)
• 649bd7a fix bug with loading points to multiple files widget (#441)
• 7afab56 [pre-commit.ci] pre-commit autoupdate (#439)
• 10852e6 refactor: Change most of call QFileDialog to more generic code (#440)
• b1c2cb9 refactor: export common code for load/save dialog to one place (#437)
• c6f14db Update requirements, solve dask alert (#438)
• 106ba0a fix name of shallow test
• 3cf6e37 Fix no mocing version which cause pre-relase test fail (#435)
• 80c6295 tests: Add test for PartSeg.common_backend module (#433)
• 99516b8 feat: Add callback mechanism to ProfileDict, live update of ROI render parameters (#432)
• 3f533f4 feat: Add option to select rendering method for ROI (#431)
• 1cb5498 feat: Add threshold information in layer annotation in the Multiple Otsu ROI extraction method (#430)
• f30763f fix: Bugs in generation proces of changelog for release. (#428)

This list of changes was auto generated.

v0.13.12

0.13.12

Bug Fixes

• Importing the previous version of settings (#406)
• Cutting without masking data (#407)
• Save in subdirectory in batch plan (#414)
• Loading plugins for batch processing (#423)

Features

• Add randomization option for correlation calculation (#421)
• Add Imagej TIFF writter for image. (#405)
• Mask create widget for napari (#395)
• In napari roi extraction method show information from roi extraction method (#408)
• Add *[0-9].tif button in batch processing window (#412)
• Better label representation in 3d view (#418)

Refactor

• Use Font Awesome instead of custom symbols (#424)

Changes:

• a2d13e8 Add information about 0.13.12 release to changelog
• 3884824 Bump napari version to 0.4.12 (#426)
• 8f0ed3d fix GammaInfoWidget to use qt font awesome (#425)
• f26eced Add links to installation troubleshooting from Readme. (#413)
• 866b2d1 refactor: Use Font Awesome instead of custom symbols (#424)
• 180f3d5 fest: Add randomization option for correlation calculation (#421)
• 7402b2d exclude soucery branch test on push
• 1e90daa fix: loading plugins for batch processing (#423)
• 7b2d732 feat: Better lebel representation in 3d view (#418)
• e8e7fb1 fix showing warning messages (#417)

See More

• 5f243bf allow test on napari 0.4.12
• 0d54ae2 fix: save in subdirecory in batch plan (#414)
• cfe344d feat: add *[0-9].tif button in batch processing window (#412)
• 9ae2757 More verbose output of segmetation algorithm (#411)
• bfa7e4d Remove reduntdant test run (#410)
• 9218b5b feat: In napari roi extraction method show information from roi extraction method (#408)
• 1a6104d feat: Mask create widget for napari (#395)
• 092c02e fix: cutting without masking data (#407)
• 9ec4917 feat: Add Imagej TIFF writter for image. (#405)
• 3ab5b0e fix: importing previous version of settings (#406)
• f58230a Add test for napari plugins different napari version compatybility (#404)
• 9bf7b78 Fix pre release test failiture (#401)
• 2b0dca2 update short description
• a69cae7 Add cancel in progress github actions (after new commit) (#398)

This list of changes was auto generated.

v0.13.11

0.13.11

Bug Fixes

• Adding mask in Prepare Plan for batch (#383)
• Set proper completion mode in SearchComboBox (#384)
• Showing warnings on the error with ROI load (#385)

Features

• Add CellFromNucleusFlow "Cell from nucleus flow" cell segmentation method (#367)
• When cutting components in PartSeg ROI mask allow not masking outer data (#379)
• Theme selection in GUI (#381)
• Allow return points from ROI extraction algorithm (#382)
• Add measurement to get ROI annotation by name. (#386)
• PartSeg ROI extraction algorithms as napari plugins (#387)
• Add Pearson, Mander's, Intensity, Spearman colocalization measurements (#392)
• Separate standalone napari settings from PartSeg embedded napari settings (#397)

Performance

• Use faster calc bound function (#375)

Refactor

• Remove CustomApplication (#389)

Changes:

• 23a42af update changelog
• 06177ae [pre-commit.ci] pre-commit autoupdate (#396)
• ef03906 feat: Separate standalone napari settings from PartSeg embeded napari settings (#397)
• 66c077b update pyinstaller requirements version (#393)
• 992c0d9 Fix bug in wrong numeric type in Colocalization (#394)
• 32bde2a feat: Add Pearson, Mander's, Intensity, Spearman colocalizatiom measurements (#392)
• e5bf01d refactor: Remove CustomApplication (#389)
• d5e02ba [pre-commit.ci] pre-commit autoupdate (#380)
• de27d5d feat: PartSeg ROI extraction algoritms as napari plugins (#387)
• ef4b0cd feat: Add measurement to get ROI annotation by name. (#386)

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• 9207610 fix: showing warnings on error with ROI load (#385)
• 2fa76c6 fix: set proper completion mode in SearchComboBox (#384)
• 1643576 fix: Adding mask in Prepare Plan for batch (#383)
• 5c0638e fix badges to point to develop branch
• 9a31f8b feat: allow return points from ROI extraction algorithm (#382)
• a58365b feat: theme selection in GUI (#381)
• cfc3465 feat: When cutting components in PartSeg roi mask allow not masking outer data (#379)
• 13325b7 add information about napari plugins on top of readme
• 6b7b29a Clean codebase from unused and untested code (#376)
• 37a70ac perf: Use faster calc bound function (#375)
• 8110331 [pre-commit.ci] pre-commit autoupdate (#371)
• 4e7c1d0 allow plugins to specify hiddenimports in plugins
• 5e48776 fix PARTSEG-DM
• 6975e85 Change coverage to run on linux, disable pyside2 tests on feature/* (#368)
• 6447175 make Image.get_axis_positions and Image.get_array_axis_positions classmethods
• 35dff28 feat: add CellFromNucleusFlow "Cell from nucleus flow" cell segmentation method (#367)
• f6bb1bb [pre-commit.ci] pre-commit autoupdate (#364)

This list of changes was auto generated.